Variant report

Variant	rs12883984
Chromosome Location	chr14:78865412-78865413
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10131390	0.95[CEU][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10483899	0.93[JPT][hapmap]
rs1112573	0.85[GIH][hapmap];0.93[JPT][hapmap]
rs11159355	0.86[AMR][1000 genomes]
rs11159356	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11159357	0.96[CEU][hapmap];0.90[GIH][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap];0.84[YRI][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12432856	0.82[GIH][hapmap];0.93[JPT][hapmap]
rs17755949	0.84[CHB][hapmap];0.81[CHD][hapmap];0.82[GIH][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs34853774	0.84[CHB][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.84[ASN][1000 genomes]
rs60110504	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7149345	0.83[MEX][hapmap]
rs72681525	0.85[ASN][1000 genomes]
rs8012215	0.80[AMR][1000 genomes]
rs8020842	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs917906	1.00[CEU][hapmap];0.87[MEX][hapmap];0.97[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs969071	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12883984	GTF2A1	cis	parietal	SCAN
rs12883984	COQ6	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78864600-78866200	Enhancers	Brain Germinal Matrix	brain
2	chr14:78865200-78869400	Weak transcription	Brain Angular Gyrus	brain
3	chr14:78865400-78871200	Weak transcription	Brain Anterior Caudate	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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