Variant report

Variant	rs10139602
Chromosome Location	chr14:78876273-78876274
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:78868093..78870050-chr14:78874447..78876831,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10131390	0.84[CHB][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10135795	0.94[CHB][hapmap]
rs10136254	0.89[CHB][hapmap];0.89[JPT][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11159357	0.80[EUR][1000 genomes]
rs12887343	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2110426	0.84[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2215837	0.83[CHB][hapmap]
rs6574440	0.94[CHB][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6574441	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7143565	0.94[CHB][hapmap];0.89[JPT][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7144816	0.84[JPT][hapmap]
rs7149345	0.80[EUR][1000 genomes]
rs7156727	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7157332	1.00[CHB][hapmap];0.89[JPT][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8006308	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8007953	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8008554	0.88[CHB][hapmap]
rs8008709	0.88[CHB][hapmap]
rs8017044	0.83[CHB][hapmap];0.91[EUR][1000 genomes]
rs965408	0.83[CHB][hapmap];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv2757577	chr14:78875607-78912967	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
3	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78873400-78880600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr14:78873400-78881400	Weak transcription	Brain Anterior Caudate	brain
3	chr14:78873600-78876600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr14:78873600-78880600	Weak transcription	Brain Angular Gyrus	brain
5	chr14:78874200-78876600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr14:78874200-78881000	Weak transcription	Brain Hippocampus Middle	brain
7	chr14:78875200-78878000	Weak transcription	GM12878-XiMat	blood

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