Variant report

Variant	rs7144816
Chromosome Location	chr14:78870408-78870409
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10135795	0.83[MEX][hapmap]
rs10136254	0.83[JPT][hapmap]
rs10139602	0.84[JPT][hapmap]
rs12893958	0.89[CHB][hapmap];0.84[JPT][hapmap]
rs17755949	0.81[AMR][1000 genomes]
rs2110426	0.89[JPT][hapmap]
rs2110427	0.84[JPT][hapmap]
rs6574441	0.94[JPT][hapmap]
rs7143565	0.84[JPT][hapmap]
rs7157332	0.94[JPT][hapmap]
rs72681525	0.83[AMR][1000 genomes]
rs72681530	0.81[AMR][1000 genomes]
rs8006004	0.85[CHB][hapmap];0.82[GIH][hapmap];0.92[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78865400-78871200	Weak transcription	Brain Anterior Caudate	brain
2	chr14:78869200-78872400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr14:78869400-78870800	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr14:78869400-78871000	Active TSS	Brain Angular Gyrus	brain
5	chr14:78869400-78875000	Active TSS	GM12878-XiMat	blood
6	chr14:78869600-78870600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr14:78869600-78870600	Active TSS	Brain Inferior Temporal Lobe	brain
8	chr14:78869600-78870600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
9	chr14:78869600-78870800	Enhancers	H1 Cell Line	embryonic stem cell
10	chr14:78869600-78871000	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr14:78869600-78871600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr14:78869800-78870600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr14:78869800-78870800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr14:78870000-78871000	Active TSS	Brain Cingulate Gyrus	brain
15	chr14:78870200-78870600	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr14:78870200-78871200	Weak transcription	Brain Germinal Matrix	brain
17	chr14:78870400-78871000	Enhancers	iPS-18 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links