Variant report

Variant	rs1861082
Chromosome Location	chr14:78967476-78967477
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10136682	1.00[CHB][hapmap]
rs1015964	1.00[CEU][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1030123	0.91[CEU][hapmap]
rs1030124	0.90[CEU][hapmap]
rs10431730	0.81[EUR][1000 genomes]
rs10483902	0.80[CHB][hapmap];0.93[GIH][hapmap];0.84[JPT][hapmap];0.87[TSI][hapmap]
rs10483903	1.00[CEU][hapmap];0.83[CHB][hapmap];0.83[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap]
rs10483905	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs10483907	1.00[CEU][hapmap];0.84[MEX][hapmap];0.91[TSI][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10782463	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs10873317	1.00[CHB][hapmap]
rs11159362	0.83[EUR][1000 genomes]
rs11159364	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs11159367	1.00[CEU][hapmap]
rs11159368	1.00[CEU][hapmap]
rs11159370	1.00[CEU][hapmap]
rs1122840	0.91[CEU][hapmap];0.81[TSI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1122841	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1122842	1.00[CEU][hapmap];0.83[CHB][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1122898	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11622040	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap]
rs11622407	1.00[CEU][hapmap]
rs11622766	0.82[CEU][hapmap]
rs11622820	0.95[CEU][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11625200	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs11625544	0.80[EUR][1000 genomes]
rs11626833	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs11626916	1.00[CEU][hapmap]
rs11629123	0.91[CEU][hapmap]
rs11844960	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11851333	0.91[CHB][hapmap];0.82[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap]
rs12586255	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs12586887	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12588305	1.00[CEU][hapmap];0.83[CHB][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12588847	1.00[CEU][hapmap]
rs12897526	0.85[GIH][hapmap]
rs1468743	0.95[CEU][hapmap];0.88[MEX][hapmap];0.97[TSI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1544622	1.00[CEU][hapmap];0.88[MEX][hapmap];0.97[TSI][hapmap]
rs1544623	0.91[CEU][hapmap]
rs1990531	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs2098518	0.91[CEU][hapmap];0.91[EUR][1000 genomes]
rs2192418	1.00[CEU][hapmap];0.95[JPT][hapmap]
rs2193665	0.83[CHD][hapmap];0.81[TSI][hapmap]
rs2193670	0.91[CEU][hapmap];0.92[EUR][1000 genomes]
rs2366101	1.00[CEU][hapmap];0.97[TSI][hapmap]
rs35810359	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs368692	1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.87[TSI][hapmap]
rs4243660	0.91[CEU][hapmap]
rs4254256	0.82[AMR][1000 genomes]
rs4903768	0.91[CEU][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4903769	1.00[CEU][hapmap]
rs4903771	1.00[CEU][hapmap]
rs4903772	1.00[CEU][hapmap]
rs4903773	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs4903776	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4903777	0.92[EUR][1000 genomes]
rs4903779	0.92[EUR][1000 genomes]
rs59161552	0.83[EUR][1000 genomes]
rs6574451	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs7150018	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7154619	1.00[CEU][hapmap]
rs7155126	1.00[CEU][hapmap]
rs727208	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs8006053	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2758363	chr14:78903610-79173528	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1037999	chr14:78966643-79026875	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1861082	HRASLS5	trans	cerebellum	SCAN
rs1861082	LTBP2	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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