Variant report
| Variant | rs1122898 |
|---|---|
| Chromosome Location | chr14:78965242-78965243 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs1015964 | 0.86[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs10431730 | 0.81[EUR][1000 genomes] |
| rs10483907 | 0.85[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs11159362 | 0.83[EUR][1000 genomes] |
| rs1122840 | 0.85[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs1122841 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1122842 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11622820 | 0.91[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs11625200 | 0.82[EUR][1000 genomes] |
| rs11625544 | 0.80[EUR][1000 genomes] |
| rs11844960 | 0.86[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs12588305 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1468743 | 0.91[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs1990531 | 0.83[EUR][1000 genomes] |
| rs2098518 | 0.91[EUR][1000 genomes] |
| rs2193670 | 0.92[EUR][1000 genomes] |
| rs35810359 | 0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4254256 | 0.82[AMR][1000 genomes] |
| rs4903768 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs4903776 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4903777 | 0.92[EUR][1000 genomes] |
| rs4903779 | 0.92[EUR][1000 genomes] |
| rs59161552 | 0.83[EUR][1000 genomes] |
| rs7150018 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2760000 | chr14:78875607-79173528 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | esv2758363 | chr14:78903610-79173528 | Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:78965200-78966000 | Weak transcription | Brain Inferior Temporal Lobe | brain |
