Variant report

Variant	rs11625544
Chromosome Location	chr14:78922933-78922934
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1015964	0.81[GIH][hapmap]
rs1030123	0.86[CEU][hapmap]
rs1030124	0.85[CEU][hapmap]
rs10431730	1.00[ASW][hapmap];0.90[CEU][hapmap];0.89[CHB][hapmap];0.98[GIH][hapmap];0.80[JPT][hapmap];0.86[MEX][hapmap];0.97[TSI][hapmap];0.82[AFR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10483907	0.81[GIH][hapmap]
rs1112573	0.81[TSI][hapmap]
rs11159362	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1122840	0.86[CEU][hapmap];0.85[GIH][hapmap];0.94[TSI][hapmap];0.86[EUR][1000 genomes]
rs1122841	0.80[EUR][1000 genomes]
rs1122842	0.80[EUR][1000 genomes]
rs1122898	0.80[EUR][1000 genomes]
rs11622679	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11622766	0.95[CEU][hapmap]
rs11622820	0.82[CEU][hapmap];0.84[EUR][1000 genomes]
rs11625200	1.00[ASW][hapmap];0.95[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.80[JPT][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap];1.00[AFR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11629123	0.86[CEU][hapmap]
rs12432856	1.00[MKK][hapmap];0.81[TSI][hapmap]
rs12586255	0.83[CEU][hapmap]
rs12588305	0.80[EUR][1000 genomes]
rs1468743	0.82[CEU][hapmap];0.83[GIH][hapmap];0.84[EUR][1000 genomes]
rs1544622	0.83[GIH][hapmap]
rs1544623	0.86[CEU][hapmap];0.90[GIH][hapmap];0.97[TSI][hapmap]
rs17755949	0.89[CHB][hapmap];0.81[TSI][hapmap]
rs17829186	0.80[CEU][hapmap];0.84[CHB][hapmap];0.87[JPT][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1990531	0.95[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap];0.82[AFR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2098518	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs2193670	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs2366101	0.83[GIH][hapmap]
rs35810359	0.80[EUR][1000 genomes]
rs4243660	0.86[CEU][hapmap]
rs4899711	0.80[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4903768	1.00[CHB][hapmap];0.91[CHD][hapmap];0.86[GIH][hapmap];0.80[JPT][hapmap];0.82[TSI][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4903777	0.86[EUR][1000 genomes]
rs4903779	0.85[EUR][1000 genomes]
rs59161552	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72681541	0.82[ASN][1000 genomes]
rs72681556	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2758363	chr14:78903610-79173528	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78907200-78928200	Weak transcription	Brain Germinal Matrix	brain
2	chr14:78919600-78923000	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr14:78920800-78923000	Enhancers	Brain Angular Gyrus	brain
4	chr14:78922800-78923000	Enhancers	Brain Hippocampus Middle	brain
5	chr14:78922800-78923000	Enhancers	Brain Substantia Nigra	brain
6	chr14:78922800-78923000	Enhancers	GM12878-XiMat	blood

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