Variant report

Variant	rs4903768
Chromosome Location	chr14:78950498-78950499
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1015964	0.91[CEU][hapmap];0.85[GIH][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1030123	0.82[CEU][hapmap]
rs1030124	0.81[CEU][hapmap]
rs10431730	0.86[CEU][hapmap];0.89[CHB][hapmap];0.86[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10483903	0.91[CEU][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap]
rs10483905	0.91[CEU][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap]
rs10483907	0.91[CEU][hapmap];0.86[GIH][hapmap];0.96[MEX][hapmap];0.82[TSI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10782463	0.91[CEU][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap]
rs11159362	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11159364	0.91[CEU][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap]
rs11159367	0.91[CEU][hapmap]
rs11159368	0.91[CEU][hapmap]
rs11159370	0.90[CEU][hapmap]
rs1122840	0.82[CEU][hapmap];0.81[GIH][hapmap];0.82[TSI][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1122841	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1122842	0.91[CEU][hapmap];0.92[MEX][hapmap];0.91[TSI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1122898	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11622040	0.91[CEU][hapmap]
rs11622407	0.95[CEU][hapmap]
rs11622766	0.82[CEU][hapmap]
rs11622820	0.95[CEU][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11625200	0.82[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11625544	1.00[CHB][hapmap];0.91[CHD][hapmap];0.86[GIH][hapmap];0.80[JPT][hapmap];0.82[TSI][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11626833	0.91[CEU][hapmap]
rs11626916	0.91[CEU][hapmap]
rs11629123	0.82[CEU][hapmap]
rs11844960	0.91[CEU][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11851333	0.81[TSI][hapmap]
rs12586255	0.94[CEU][hapmap]
rs12586887	0.90[CEU][hapmap]
rs12588305	0.91[CEU][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12588847	0.91[CEU][hapmap]
rs1468743	0.95[CEU][hapmap];0.98[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1544622	0.91[CEU][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap]
rs1544623	0.82[CEU][hapmap];0.86[GIH][hapmap];0.88[MEX][hapmap];0.85[TSI][hapmap]
rs17755949	0.89[CHB][hapmap]
rs17829186	0.84[CHB][hapmap];0.82[ASN][1000 genomes]
rs1861082	0.91[CEU][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap]
rs1990531	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2098518	0.81[CEU][hapmap];0.84[EUR][1000 genomes]
rs2192418	0.91[CEU][hapmap]
rs2193670	0.82[CEU][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2366101	0.91[CEU][hapmap];0.93[GIH][hapmap];0.92[MEX][hapmap];0.89[TSI][hapmap]
rs35810359	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4243660	0.82[CEU][hapmap]
rs4899711	0.94[CHB][hapmap];0.82[ASN][1000 genomes]
rs4903769	0.90[CEU][hapmap]
rs4903771	0.91[CEU][hapmap]
rs4903772	0.91[CEU][hapmap]
rs4903773	0.91[CEU][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap]
rs4903776	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4903777	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4903779	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs59161552	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6574451	0.83[CEU][hapmap];0.83[MEX][hapmap];0.91[TSI][hapmap]
rs7150018	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7154619	0.91[CEU][hapmap]
rs7155126	0.91[CEU][hapmap]
rs72681556	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs727208	0.91[CEU][hapmap]
rs8006053	0.91[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2758363	chr14:78903610-79173528	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs4903768	HEATR4	cis	cerebellum	SCAN
rs4903768	HEATR4	cis	parietal	SCAN
rs4903768	ALDH6A1	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78942800-78950600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr14:78946000-78950600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr14:78946200-78951600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr14:78949600-78951800	Enhancers	Brain Germinal Matrix	brain
5	chr14:78950200-78955400	Weak transcription	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links