Variant report

Variant	rs1544623
Chromosome Location	chr14:78960255-78960256
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1015964	0.91[CEU][hapmap];0.86[GIH][hapmap];0.91[JPT][hapmap];0.81[TSI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1030123	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs1030124	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs10431730	0.85[CEU][hapmap];0.93[GIH][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.84[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs10483903	0.91[CEU][hapmap];0.84[MEX][hapmap]
rs10483905	0.91[CEU][hapmap]
rs10483907	0.91[CEU][hapmap];0.86[GIH][hapmap];0.91[JPT][hapmap];0.83[MEX][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10782463	0.91[CEU][hapmap]
rs11159362	0.91[EUR][1000 genomes]
rs11159364	0.91[CEU][hapmap]
rs11159367	0.91[CEU][hapmap];0.82[CHB][hapmap]
rs11159368	0.91[CEU][hapmap]
rs11159370	0.90[CEU][hapmap];0.86[CHB][hapmap];0.83[JPT][hapmap]
rs1122840	1.00[CEU][hapmap];0.91[CHB][hapmap];0.85[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1122841	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1122842	0.91[CEU][hapmap];0.95[JPT][hapmap];0.80[MEX][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1122898	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11622040	0.91[CEU][hapmap]
rs11622407	0.89[CEU][hapmap]
rs11622766	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11622820	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11625200	0.91[CEU][hapmap];0.90[GIH][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.91[EUR][1000 genomes]
rs11625544	0.86[CEU][hapmap];0.90[GIH][hapmap];0.97[TSI][hapmap];0.89[EUR][1000 genomes]
rs11626833	0.91[CEU][hapmap]
rs11626916	0.91[CEU][hapmap];0.82[CHB][hapmap]
rs11629123	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs11844960	0.91[CEU][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12586255	0.94[CEU][hapmap];0.95[JPT][hapmap]
rs12586887	0.90[CEU][hapmap]
rs12588305	0.91[CEU][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12588847	0.91[CEU][hapmap];0.82[CHB][hapmap]
rs1468743	0.86[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.80[TSI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1544622	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.80[TSI][hapmap]
rs1861082	0.91[CEU][hapmap]
rs1990531	0.91[CEU][hapmap];0.84[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2098518	1.00[CEU][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2192418	0.91[CEU][hapmap]
rs2193670	1.00[CEU][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2366101	0.91[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.80[MEX][hapmap]
rs35810359	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4243660	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs4903768	0.82[CEU][hapmap];0.86[GIH][hapmap];0.88[MEX][hapmap];0.85[TSI][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4903769	0.90[CEU][hapmap]
rs4903771	0.91[CEU][hapmap];0.82[CHB][hapmap]
rs4903772	0.91[CEU][hapmap];0.82[CHB][hapmap]
rs4903773	0.91[CEU][hapmap]
rs4903776	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4903777	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4903779	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59161552	0.84[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs6574451	0.83[CEU][hapmap]
rs7150018	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7154619	0.91[CEU][hapmap];0.82[CHB][hapmap]
rs7155126	0.91[CEU][hapmap];0.82[CHB][hapmap]
rs72681556	0.88[EUR][1000 genomes]
rs727208	0.91[CEU][hapmap]
rs8006053	0.91[CEU][hapmap];0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2758363	chr14:78903610-79173528	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1544623	ESRRB	cis	cerebellum	SCAN
rs1544623	ALDH6A1	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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