Variant report

Variant	rs72681556
Chromosome Location	chr14:78916015-78916016
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10431730	0.82[AFR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11159362	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1122840	0.85[EUR][1000 genomes]
rs11622679	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11622820	0.83[EUR][1000 genomes]
rs11625200	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11625544	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1468743	0.83[EUR][1000 genomes]
rs17829186	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1990531	0.82[AFR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2098518	0.83[EUR][1000 genomes]
rs2193670	0.83[EUR][1000 genomes]
rs4899711	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4903768	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4903777	0.85[EUR][1000 genomes]
rs4903779	0.84[EUR][1000 genomes]
rs59161552	0.82[AFR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72681541	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2758363	chr14:78903610-79173528	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78907200-78928200	Weak transcription	Brain Germinal Matrix	brain
2	chr14:78914800-78916600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr14:78915000-78918800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr14:78915200-78919600	Weak transcription	Brain Angular Gyrus	brain
5	chr14:78915200-78921000	Weak transcription	Brain Anterior Caudate	brain
6	chr14:78915400-78916800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr14:78915400-78917200	Weak transcription	Fetal Brain Male	brain
8	chr14:78915400-78918800	Weak transcription	Brain Substantia Nigra	brain
9	chr14:78915600-78917000	Weak transcription	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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