Variant report

Variant	rs17829186
Chromosome Location	chr14:78912067-78912068
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10431730	0.84[CHB][hapmap];0.80[EUR][1000 genomes]
rs10483899	0.95[CEU][hapmap]
rs1112573	0.95[CEU][hapmap]
rs11622679	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11625200	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11625544	0.80[CEU][hapmap];0.84[CHB][hapmap];0.87[JPT][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12432856	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs12589172	0.84[EUR][1000 genomes]
rs17755949	0.95[CEU][hapmap];0.84[CHB][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1990531	0.84[CHB][hapmap];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34853774	0.81[CEU][hapmap]
rs4899711	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4903752	0.83[EUR][1000 genomes]
rs4903768	0.84[CHB][hapmap];0.82[ASN][1000 genomes]
rs59161552	0.82[ASN][1000 genomes]
rs72681525	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72681530	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72681541	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72681556	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv2757577	chr14:78875607-78912967	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
3	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2758363	chr14:78903610-79173528	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78894400-78914600	Weak transcription	GM12878-XiMat	blood
2	chr14:78907200-78928200	Weak transcription	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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