Variant report

Variant	rs4903752
Chromosome Location	chr14:78834729-78834730
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11159355	0.81[EUR][1000 genomes]
rs11622679	0.88[EUR][1000 genomes]
rs12432856	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12589172	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17755949	0.97[EUR][1000 genomes]
rs17829186	0.83[EUR][1000 genomes]
rs34005817	0.80[EUR][1000 genomes]
rs34853774	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4899711	0.85[EUR][1000 genomes]
rs72681525	0.97[EUR][1000 genomes]
rs72681530	0.96[EUR][1000 genomes]
rs72681541	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78833200-78835600	Enhancers	Brain Germinal Matrix	brain
2	chr14:78833600-78834800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr14:78833600-78835400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr14:78833800-78834800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr14:78834200-78834800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr14:78834400-78835200	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr14:78834600-78834800	Enhancers	H9 Cell Line	embryonic stem cell
8	chr14:78834600-78835200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr14:78834600-78835200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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