Variant report

Variant	rs11622820
Chromosome Location	chr14:78957731-78957732
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1015964	0.95[CEU][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1030123	0.87[CEU][hapmap];0.92[CHB][hapmap];0.95[JPT][hapmap]
rs1030124	0.86[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs10431730	0.81[CEU][hapmap];0.86[EUR][1000 genomes]
rs10483903	0.95[CEU][hapmap]
rs10483905	0.95[CEU][hapmap]
rs10483907	0.95[CEU][hapmap];0.91[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10782463	0.95[CEU][hapmap]
rs11159362	0.87[EUR][1000 genomes]
rs11159364	0.95[CEU][hapmap]
rs11159367	0.96[CEU][hapmap];0.83[CHB][hapmap]
rs11159368	0.96[CEU][hapmap]
rs11159370	0.86[CEU][hapmap];0.86[CHB][hapmap]
rs1122840	0.86[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1122841	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1122842	0.95[CEU][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1122898	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11622040	0.96[CEU][hapmap]
rs11622407	1.00[CEU][hapmap]
rs11622766	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11625200	0.86[CEU][hapmap];0.87[EUR][1000 genomes]
rs11625544	0.82[CEU][hapmap];0.84[EUR][1000 genomes]
rs11626833	0.92[CEU][hapmap]
rs11626916	0.96[CEU][hapmap];0.83[CHB][hapmap]
rs11629123	0.87[CEU][hapmap];0.92[CHB][hapmap];0.95[JPT][hapmap]
rs11844960	0.96[CEU][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12586255	0.94[CEU][hapmap];0.95[JPT][hapmap]
rs12586887	0.95[CEU][hapmap]
rs12588305	0.95[CEU][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12588847	0.96[CEU][hapmap];0.83[CHB][hapmap]
rs1468743	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1544622	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap]
rs1544623	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1861082	0.95[CEU][hapmap]
rs1990531	0.87[CEU][hapmap];0.88[EUR][1000 genomes]
rs2098518	0.86[CEU][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2192418	0.96[CEU][hapmap]
rs2193670	0.87[CEU][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2366101	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[YRI][hapmap]
rs35810359	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4243660	0.87[CEU][hapmap];0.92[CHB][hapmap];0.95[JPT][hapmap]
rs4903768	0.95[CEU][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4903769	0.95[CEU][hapmap]
rs4903771	0.96[CEU][hapmap];0.83[CHB][hapmap]
rs4903772	0.96[CEU][hapmap];0.83[CHB][hapmap]
rs4903773	0.95[CEU][hapmap]
rs4903776	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4903777	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4903779	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59161552	0.87[EUR][1000 genomes]
rs6574451	0.87[CEU][hapmap]
rs7150018	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7154619	0.96[CEU][hapmap];0.83[CHB][hapmap]
rs7155126	0.96[CEU][hapmap];0.83[CHB][hapmap]
rs72681556	0.83[EUR][1000 genomes]
rs727208	0.96[CEU][hapmap]
rs8006053	0.96[CEU][hapmap];0.83[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2758363	chr14:78903610-79173528	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78956800-78957800	Enhancers	Brain Germinal Matrix	brain

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