Variant report

Variant	rs1861081
Chromosome Location	chr14:78904267-78904268
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10483901	0.81[CEU][hapmap]
rs1124299	0.91[CHB][hapmap];0.89[MEX][hapmap];0.92[MKK][hapmap];0.80[AMR][1000 genomes]
rs1124428	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11851070	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs12892370	0.89[MEX][hapmap]
rs17107534	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17107535	0.87[CHB][hapmap]
rs17107537	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17107538	0.81[CEU][hapmap]
rs17107542	0.81[CEU][hapmap]
rs17107548	0.81[CEU][hapmap]
rs17107550	0.81[CEU][hapmap]
rs17107557	0.81[CEU][hapmap];0.83[GIH][hapmap];0.89[MEX][hapmap]
rs17107573	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17107581	0.83[ASW][hapmap];0.81[CEU][hapmap];0.89[LWK][hapmap];0.89[MEX][hapmap];0.80[AFR][1000 genomes]
rs17107585	0.81[CEU][hapmap];0.80[AFR][1000 genomes]
rs17107591	0.81[CEU][hapmap]
rs17107601	0.81[CEU][hapmap]
rs17107609	0.81[CEU][hapmap]
rs17107613	0.81[CEU][hapmap]
rs2024332	0.86[CEU][hapmap]
rs2110419	0.81[CEU][hapmap];0.83[GIH][hapmap];0.89[MEX][hapmap]
rs2110420	0.84[CEU][hapmap];0.86[CHB][hapmap];0.91[GIH][hapmap];0.91[JPT][hapmap];0.89[MEX][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2110423	0.81[CEU][hapmap]
rs2192412	0.81[CEU][hapmap]
rs2192416	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs2215838	0.94[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4899715	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs4903758	0.81[CEU][hapmap];0.83[GIH][hapmap];0.83[MEX][hapmap]
rs57069943	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60830587	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6574445	0.81[CEU][hapmap]
rs6574446	0.81[CEU][hapmap]
rs66537136	0.80[AFR][1000 genomes]
rs66830563	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72681549	0.80[AFR][1000 genomes]
rs73314796	0.80[AFR][1000 genomes]
rs8006094	0.81[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap]
rs8012198	0.81[CEU][hapmap]
rs8012563	0.84[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs8013213	0.81[CEU][hapmap]
rs8014352	0.81[CEU][hapmap]
rs8014780	0.81[CEU][hapmap]
rs8015539	0.81[CEU][hapmap]
rs8015993	0.81[CEU][hapmap]
rs8017625	0.81[CEU][hapmap]
rs8018020	0.81[CEU][hapmap]
rs8020296	0.81[CEU][hapmap]
rs8020600	0.81[CEU][hapmap]
rs8020758	0.81[CEU][hapmap]
rs995265	0.81[CEU][hapmap];0.82[CHB][hapmap];0.87[GIH][hapmap];0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv2757577	chr14:78875607-78912967	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
3	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2758363	chr14:78903610-79173528	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78892200-78904800	Weak transcription	Brain Germinal Matrix	brain
2	chr14:78894400-78914600	Weak transcription	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links