Variant report

Variant	rs8012563
Chromosome Location	chr14:78920327-78920328
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17107534	0.83[CHB][hapmap];0.83[JPT][hapmap];0.81[AMR][1000 genomes]
rs17107537	0.81[AMR][1000 genomes]
rs17107573	0.84[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes]
rs1861081	0.84[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2110420	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2110421	0.82[ASN][1000 genomes]
rs2192416	0.95[CHB][hapmap]
rs2215838	0.86[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs4899715	0.96[CHB][hapmap]
rs57069943	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs60830587	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs66830563	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs8006094	0.96[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs995265	0.95[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2758363	chr14:78903610-79173528	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78907200-78928200	Weak transcription	Brain Germinal Matrix	brain
2	chr14:78915200-78921000	Weak transcription	Brain Anterior Caudate	brain
3	chr14:78917600-78922000	Weak transcription	GM12878-XiMat	blood
4	chr14:78918000-78921200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr14:78918800-78922600	Enhancers	Brain Cingulate Gyrus	brain
6	chr14:78919400-78920400	Enhancers	Brain Hippocampus Middle	brain
7	chr14:78919600-78923000	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr14:78920200-78920800	Weak transcription	Brain Angular Gyrus	brain
9	chr14:78920200-78921200	Weak transcription	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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