Variant report

Variant	rs2110420
Chromosome Location	chr14:78921353-78921354
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11851070	0.87[CHB][hapmap]
rs17107534	0.86[CHB][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes]
rs17107537	0.81[AMR][1000 genomes]
rs17107557	0.83[GIH][hapmap]
rs17107573	0.84[CEU][hapmap];0.82[CHB][hapmap];0.91[GIH][hapmap];0.91[JPT][hapmap];0.89[MEX][hapmap];0.84[AMR][1000 genomes]
rs1861081	0.84[CEU][hapmap];0.86[CHB][hapmap];0.91[GIH][hapmap];0.91[JPT][hapmap];0.89[MEX][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2110419	0.83[GIH][hapmap]
rs2110421	0.82[ASN][1000 genomes]
rs2192416	0.95[CHB][hapmap]
rs2215838	0.86[CHB][hapmap];0.91[GIH][hapmap];0.86[JPT][hapmap];0.89[MEX][hapmap];0.80[ASN][1000 genomes]
rs4899715	0.95[CHB][hapmap]
rs4903758	0.83[GIH][hapmap]
rs57069943	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs60830587	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs66830563	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs8006094	0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs8012563	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs995265	0.95[CHB][hapmap];0.96[GIH][hapmap];0.91[JPT][hapmap];0.89[MEX][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2758363	chr14:78903610-79173528	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2110420	FOS	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78907200-78928200	Weak transcription	Brain Germinal Matrix	brain
2	chr14:78917600-78922000	Weak transcription	GM12878-XiMat	blood
3	chr14:78918800-78922600	Enhancers	Brain Cingulate Gyrus	brain
4	chr14:78919600-78923000	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr14:78920800-78922400	Enhancers	Brain Hippocampus Middle	brain
6	chr14:78920800-78923000	Enhancers	Brain Angular Gyrus	brain
7	chr14:78921000-78922000	Enhancers	Brain Anterior Caudate	brain
8	chr14:78921200-78921800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
9	chr14:78921200-78922400	Enhancers	Brain Substantia Nigra	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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