Variant report

Variant	rs2215838
Chromosome Location	chr14:78889853-78889854
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1124299	0.91[CHB][hapmap];0.82[JPT][hapmap];0.89[MEX][hapmap];0.90[MKK][hapmap];0.82[AMR][1000 genomes]
rs1124428	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11851070	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs12892370	0.89[MEX][hapmap]
rs17107534	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17107535	0.87[CHB][hapmap]
rs17107537	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17107557	0.83[GIH][hapmap];0.89[MEX][hapmap]
rs17107573	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17107581	0.85[LWK][hapmap];0.89[MEX][hapmap]
rs1861081	0.94[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2110419	0.83[GIH][hapmap];0.89[MEX][hapmap]
rs2110420	0.86[CHB][hapmap];0.91[GIH][hapmap];0.86[JPT][hapmap];0.89[MEX][hapmap];0.80[ASN][1000 genomes]
rs2192416	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs4899715	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs4903758	0.83[GIH][hapmap];0.83[MEX][hapmap]
rs57069943	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60830587	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66830563	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8006094	0.81[CHB][hapmap];0.80[JPT][hapmap]
rs8012563	0.86[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs995265	0.82[CHB][hapmap];0.87[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv2757577	chr14:78875607-78912967	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
3	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2215838	ZNF16	trans	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78886400-78898200	Weak transcription	Fetal Brain Male	brain
2	chr14:78889600-78891600	Weak transcription	Brain Germinal Matrix	brain
3	chr14:78889800-78890000	Enhancers	GM12878-XiMat	blood

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