Variant report

Variant	rs1124299
Chromosome Location	chr14:78882921-78882922
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11159358	0.81[CEU][hapmap]
rs1124428	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11851070	0.91[CHB][hapmap]
rs17107534	0.91[CHB][hapmap];0.82[JPT][hapmap];0.80[AMR][1000 genomes]
rs17107535	0.95[CHB][hapmap]
rs17107537	0.80[AMR][1000 genomes]
rs17107573	0.95[CHB][hapmap];0.95[CHD][hapmap];0.88[MEX][hapmap]
rs1861081	0.91[CHB][hapmap];0.89[MEX][hapmap];0.92[MKK][hapmap];0.80[AMR][1000 genomes]
rs2192416	0.82[CHB][hapmap]
rs2215838	0.91[CHB][hapmap];0.82[JPT][hapmap];0.89[MEX][hapmap];0.90[MKK][hapmap];0.82[AMR][1000 genomes]
rs4899715	0.82[CHB][hapmap]
rs8006094	0.82[CHB][hapmap]
rs995265	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv2757577	chr14:78875607-78912967	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
3	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1124299	LIN52	cis	cerebellum	SCAN
rs1124299	YLPM1	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78879200-78883000	Weak transcription	GM12878-XiMat	blood
2	chr14:78882000-78884200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr14:78882400-78888000	Weak transcription	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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