Variant report

Variant	rs7157669
Chromosome Location	chr14:78937677-78937678
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12892860	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs17107614	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs17107634	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs17107659	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs17107714	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs17107723	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs17107725	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs17107729	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs17107749	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs4899713	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs724373	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs8007529	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs8012913	0.86[CHB][hapmap];0.80[JPT][hapmap]
rs8017143	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs995266	0.86[CHB][hapmap];0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2758363	chr14:78903610-79173528	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links