Variant report

Variant	rs12887245
Chromosome Location	chr14:78832227-78832228
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17107396	0.85[JPT][hapmap]
rs17107482	0.95[CHB][hapmap]
rs214003	0.85[JPT][hapmap]
rs214024	0.83[CHB][hapmap]
rs214026	0.90[CHB][hapmap]
rs214027	0.90[CHB][hapmap]
rs2192420	0.90[CHB][hapmap]
rs2366155	0.90[CHB][hapmap]
rs60879674	0.98[ASN][1000 genomes]
rs66542227	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78826400-78833200	Weak transcription	Brain Germinal Matrix	brain
2	chr14:78827000-78833400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr14:78827400-78833200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr14:78831800-78833600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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