Variant report

Variant	rs214003
Chromosome Location	chr14:78803030-78803031
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12887245	0.85[JPT][hapmap]
rs17107396	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs191940	0.90[CEU][hapmap];0.80[CHB][hapmap];0.91[YRI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs214006	0.90[CEU][hapmap];0.85[CHB][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs214007	0.90[CEU][hapmap];0.81[CHB][hapmap];0.83[EUR][1000 genomes]
rs214008	0.90[CEU][hapmap];0.84[CHB][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs214010	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs214011	0.84[ASW][hapmap];0.90[CEU][hapmap];0.86[CHB][hapmap];0.86[TSI][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs214012	0.90[CEU][hapmap];0.86[CHB][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs214013	0.89[CEU][hapmap];0.86[CHB][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs214014	0.90[CEU][hapmap];0.86[CHB][hapmap];0.86[TSI][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs214017	0.90[CEU][hapmap];0.81[CHB][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs214018	0.84[ASW][hapmap];0.81[CEU][hapmap];0.86[CHB][hapmap];0.86[TSI][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs214019	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs214020	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs214021	0.90[CEU][hapmap];0.81[CHB][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs214022	0.90[CEU][hapmap];0.85[AMR][1000 genomes]
rs214023	0.86[TSI][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs214024	0.86[TSI][hapmap];0.84[AMR][1000 genomes]
rs214026	0.80[AMR][1000 genomes]
rs214027	0.80[AMR][1000 genomes]
rs35367079	0.98[ASN][1000 genomes]
rs57562242	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1054051	chr14:78772614-78805311	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv976838	chr14:78799531-78804498	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78798000-78807400	Weak transcription	Brain Germinal Matrix	brain
2	chr14:78802200-78810000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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