Variant report

Variant	rs214022
Chromosome Location	chr14:78812909-78812910
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs191940	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs214003	0.90[CEU][hapmap];0.85[AMR][1000 genomes]
rs214006	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs214007	1.00[CEU][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs214008	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs214010	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs214011	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs214012	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs214013	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs214014	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs214017	1.00[CEU][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs214018	0.91[CEU][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs214019	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs214020	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs214021	1.00[CEU][hapmap];0.97[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs214023	0.83[CEU][hapmap];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs214024	0.91[AMR][1000 genomes]
rs214026	0.87[AMR][1000 genomes]
rs214027	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78810200-78813800	Enhancers	Brain Germinal Matrix	brain
2	chr14:78810400-78814400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr14:78810800-78813000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr14:78810800-78814400	Enhancers	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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