Variant report

Variant	rs12893431
Chromosome Location	chr14:78879227-78879228
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10483901	0.80[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs11159358	0.90[CEU][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11159359	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11159361	0.84[AMR][1000 genomes]
rs12887878	0.92[AMR][1000 genomes]
rs12892370	1.00[CEU][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17107508	0.90[ASW][hapmap];0.93[MEX][hapmap];0.83[YRI][hapmap];0.92[AMR][1000 genomes]
rs17107538	0.82[LWK][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.86[AMR][1000 genomes]
rs17107542	1.00[MEX][hapmap];0.86[AMR][1000 genomes]
rs17107548	1.00[MEX][hapmap];0.86[AMR][1000 genomes]
rs17107550	0.86[AMR][1000 genomes]
rs17107557	0.82[MEX][hapmap]
rs17107581	0.82[MEX][hapmap]
rs17107591	1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs17107601	0.81[AMR][1000 genomes]
rs17107609	0.86[AMR][1000 genomes]
rs17107613	0.84[AMR][1000 genomes]
rs2110419	0.82[MEX][hapmap]
rs214023	0.83[CEU][hapmap]
rs214024	0.92[CEU][hapmap]
rs214026	0.92[CEU][hapmap]
rs214027	0.92[CEU][hapmap]
rs2192412	0.81[MEX][hapmap]
rs34598586	0.81[AMR][1000 genomes]
rs35007217	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35061087	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35575369	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4903758	0.88[MEX][hapmap]
rs55905917	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs55960597	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs55979048	0.86[AMR][1000 genomes]
rs56063448	0.86[AMR][1000 genomes]
rs59095684	0.82[AMR][1000 genomes]
rs60195559	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6574446	0.81[MEX][hapmap]
rs66485366	0.86[AMR][1000 genomes]
rs66607952	0.86[AMR][1000 genomes]
rs66647618	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs67217620	0.86[AMR][1000 genomes]
rs67254727	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs67267603	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs67985811	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs68180395	0.86[AMR][1000 genomes]
rs72681532	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72681546	0.86[AMR][1000 genomes]
rs8009964	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs8014352	0.81[LWK][hapmap];1.00[MEX][hapmap];0.83[YRI][hapmap];0.88[AMR][1000 genomes]
rs8015539	0.94[MEX][hapmap];0.81[MKK][hapmap];0.84[AMR][1000 genomes]
rs8017625	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs8018020	1.00[MEX][hapmap];0.84[AMR][1000 genomes]
rs8020296	1.00[MEX][hapmap];0.86[AMR][1000 genomes]
rs8020600	0.86[AMR][1000 genomes]
rs8020758	0.80[ASW][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs8021104	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv2757577	chr14:78875607-78912967	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
3	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78873400-78880600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr14:78873400-78881400	Weak transcription	Brain Anterior Caudate	brain
3	chr14:78873600-78880600	Weak transcription	Brain Angular Gyrus	brain
4	chr14:78874200-78881000	Weak transcription	Brain Hippocampus Middle	brain
5	chr14:78878000-78880000	Weak transcription	Brain Germinal Matrix	brain
6	chr14:78879200-78883000	Weak transcription	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links