Variant report

Variant	rs17107811
Chromosome Location	chr14:70606829-70606830
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10483823	1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10483827	1.00[YRI][hapmap]
rs11158836	1.00[JPT][hapmap]
rs11158838	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11158841	1.00[JPT][hapmap]
rs11846266	1.00[JPT][hapmap]
rs11847946	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11848027	1.00[YRI][hapmap]
rs11848139	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11849002	1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11849161	1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11850110	1.00[YRI][hapmap]
rs1425614	1.00[JPT][hapmap]
rs17107816	1.00[YRI][hapmap]
rs17107829	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17107846	1.00[YRI][hapmap]
rs17107850	1.00[YRI][hapmap]
rs17107859	1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17107868	1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17107872	1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17107878	0.94[YRI][hapmap]
rs17107890	1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17107902	1.00[JPT][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17107910	1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17107914	1.00[YRI][hapmap]
rs17107921	1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2332270	1.00[JPT][hapmap]
rs57013896	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57831918	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58619794	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59485932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59535814	1.00[ASN][1000 genomes]
rs60621131	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8013193	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs913479	1.00[JPT][hapmap]
rs9672017	1.00[YRI][hapmap]
rs9672032	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832826	chr14:70559589-70723464	Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70600400-70608200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr14:70602800-70607200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr14:70603000-70615400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr14:70603200-70615000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr14:70603600-70615400	Weak transcription	Psoas Muscle	Psoas
6	chr14:70604000-70638000	Weak transcription	HSMMtube	muscle
7	chr14:70605400-70615400	Weak transcription	Primary hematopoietic stem cells	blood

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