Variant report

Variant	rs11158836
Chromosome Location	chr14:70597351-70597352
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:70581826..70584664-chr14:70596799..70599153,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10483823	1.00[JPT][hapmap]
rs10782459	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158838	1.00[JPT][hapmap]
rs11158841	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.84[TSI][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11846266	1.00[JPT][hapmap]
rs11848139	1.00[JPT][hapmap]
rs11849002	1.00[JPT][hapmap]
rs11849161	1.00[JPT][hapmap]
rs12433044	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12434709	0.92[CEU][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12437377	1.00[CEU][hapmap];0.80[YRI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1425614	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1571373	0.82[AMR][1000 genomes]
rs17107811	1.00[JPT][hapmap]
rs17107829	1.00[JPT][hapmap]
rs17107859	1.00[JPT][hapmap]
rs17107868	1.00[JPT][hapmap]
rs17107872	1.00[JPT][hapmap]
rs17107890	1.00[JPT][hapmap]
rs17107902	1.00[JPT][hapmap]
rs17107910	1.00[JPT][hapmap]
rs17107921	1.00[JPT][hapmap]
rs2332270	1.00[JPT][hapmap]
rs2893	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34713959	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3850426	1.00[JPT][hapmap]
rs4899329	0.80[MEX][hapmap]
rs55695995	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56659354	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59299321	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61559466	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72729901	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72731804	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72731811	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8005725	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8013193	1.00[JPT][hapmap]
rs913479	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9672032	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832826	chr14:70559589-70723464	Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11158836	FAM71D	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70579800-70599400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr14:70583600-70599600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr14:70591400-70603200	Weak transcription	Psoas Muscle	Psoas
4	chr14:70597200-70597400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
5	chr14:70597200-70597400	Enhancers	Fetal Brain Female	brain

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