Variant report

Variant	rs3850426
Chromosome Location	chr14:70565274-70565275
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:70564827..70567373-chr14:70568673..70570974,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10483823	1.00[JPT][hapmap]
rs11158836	1.00[JPT][hapmap]
rs11158841	1.00[JPT][hapmap]
rs11849002	1.00[JPT][hapmap]
rs11849161	1.00[JPT][hapmap]
rs12147084	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12434709	1.00[JPT][hapmap]
rs1425614	1.00[JPT][hapmap]
rs17107829	1.00[JPT][hapmap]
rs17175465	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2332270	1.00[JPT][hapmap]
rs66612261	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72729873	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs913479	1.00[JPT][hapmap]
rs9672032	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
3	nsv832826	chr14:70559589-70723464	Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70560000-70567600	Enhancers	Skeletal Muscle Male	skeletal muscle
2	chr14:70560000-70567800	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr14:70563000-70565400	Enhancers	Psoas Muscle	Psoas
4	chr14:70563400-70565600	Bivalent Enhancer	Fetal Lung	lung
5	chr14:70563400-70567400	Enhancers	HSMMtube	muscle
6	chr14:70563600-70565400	Enhancers	Brain Hippocampus Middle	brain
7	chr14:70563600-70566000	Enhancers	Brain Cingulate Gyrus	brain
8	chr14:70563600-70566000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
9	chr14:70564400-70565400	Enhancers	Brain Substantia Nigra	brain
10	chr14:70564400-70565400	Enhancers	Fetal Stomach	stomach
11	chr14:70564400-70565400	Enhancers	Rectal Smooth Muscle	rectum
12	chr14:70564400-70565400	Enhancers	Right Atrium	heart
13	chr14:70564400-70565600	Enhancers	Brain Germinal Matrix	brain
14	chr14:70564400-70565600	Enhancers	Colon Smooth Muscle	Colon
15	chr14:70564400-70565600	Enhancers	Stomach Smooth Muscle	stomach
16	chr14:70564400-70565800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr14:70564400-70566000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr14:70564600-70565400	Enhancers	Left Ventricle	heart
19	chr14:70564600-70565400	Enhancers	Lung	lung
20	chr14:70564600-70565600	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr14:70564600-70565800	Enhancers	Primary hematopoietic stem cells	blood
22	chr14:70564600-70565800	Enhancers	HSMM	muscle
23	chr14:70564800-70565400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr14:70564800-70565400	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr14:70564800-70565400	Bivalent Enhancer	Osteobl	bone
26	chr14:70564800-70565800	Weak transcription	Brain Angular Gyrus	brain
27	chr14:70564800-70566400	Enhancers	Brain Anterior Caudate	brain
28	chr14:70565000-70565800	Enhancers	HepG2	liver
29	chr14:70565000-70566400	Enhancers	Fetal Brain Male	brain
30	chr14:70565200-70565400	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr14:70565200-70565400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr14:70565200-70565400	Bivalent Enhancer	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr14:70565200-70565400	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr14:70565200-70565400	Enhancers	Brain Inferior Temporal Lobe	brain
35	chr14:70565200-70565400	Flanking Active TSS	Fetal Brain Female	brain
36	chr14:70565200-70565600	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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