Variant report

Variant	rs17175465
Chromosome Location	chr14:70564804-70564805
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12147084	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1314983	1.00[LWK][hapmap]
rs3850426	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs66612261	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72729873	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
3	nsv832826	chr14:70559589-70723464	Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs17175465	FCER2	trans	brain	seeQTL
rs17175465	PCNX	cis	parietal	SCAN

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70557200-70565200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr14:70560000-70567600	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr14:70560000-70567800	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr14:70561800-70565000	Weak transcription	HepG2	liver
5	chr14:70563000-70565400	Enhancers	Psoas Muscle	Psoas
6	chr14:70563400-70565600	Bivalent Enhancer	Fetal Lung	lung
7	chr14:70563400-70567400	Enhancers	HSMMtube	muscle
8	chr14:70563600-70565200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr14:70563600-70565400	Enhancers	Brain Hippocampus Middle	brain
10	chr14:70563600-70566000	Enhancers	Brain Cingulate Gyrus	brain
11	chr14:70563600-70566000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr14:70564400-70565000	Flanking Active TSS	Fetal Brain Male	brain
13	chr14:70564400-70565000	Enhancers	Pancreas	Pancrea
14	chr14:70564400-70565200	Enhancers	Duodenum Smooth Muscle	Duodenum
15	chr14:70564400-70565200	Bivalent Enhancer	Fetal Muscle Leg	muscle
16	chr14:70564400-70565400	Enhancers	Brain Substantia Nigra	brain
17	chr14:70564400-70565400	Enhancers	Fetal Stomach	stomach
18	chr14:70564400-70565400	Enhancers	Rectal Smooth Muscle	rectum
19	chr14:70564400-70565400	Enhancers	Right Atrium	heart
20	chr14:70564400-70565600	Enhancers	Brain Germinal Matrix	brain
21	chr14:70564400-70565600	Enhancers	Colon Smooth Muscle	Colon
22	chr14:70564400-70565600	Enhancers	Stomach Smooth Muscle	stomach
23	chr14:70564400-70565800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr14:70564400-70566000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr14:70564600-70565400	Enhancers	Left Ventricle	heart
26	chr14:70564600-70565400	Enhancers	Lung	lung
27	chr14:70564600-70565600	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr14:70564600-70565800	Enhancers	Primary hematopoietic stem cells	blood
29	chr14:70564600-70565800	Enhancers	HSMM	muscle
30	chr14:70564800-70565000	Flanking Active TSS	Fetal Brain Female	brain
31	chr14:70564800-70565400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
32	chr14:70564800-70565400	Enhancers	Primary monocytes fromperipheralblood	blood
33	chr14:70564800-70565400	Bivalent Enhancer	Osteobl	bone
34	chr14:70564800-70565800	Weak transcription	Brain Angular Gyrus	brain
35	chr14:70564800-70566400	Enhancers	Brain Anterior Caudate	brain

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