Variant report

Variant	rs72729873
Chromosome Location	chr14:70556788-70556789
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12147084	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17175465	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3850426	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66612261	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70549600-70564400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr14:70554200-70563000	Weak transcription	Psoas Muscle	Psoas
3	chr14:70554400-70564400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr14:70554600-70560000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr14:70556000-70556800	Enhancers	Brain Cingulate Gyrus	brain
6	chr14:70556200-70557200	Enhancers	Brain Germinal Matrix	brain
7	chr14:70556200-70557200	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr14:70556200-70557600	Enhancers	Brain Substantia Nigra	brain
9	chr14:70556200-70560000	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr14:70556600-70556800	Enhancers	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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