Variant report

Variant	rs55695995
Chromosome Location	chr14:70586967-70586968
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10782459	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11158836	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11158841	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12433044	0.99[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12434709	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12437377	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1425614	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1571373	0.81[AMR][1000 genomes]
rs2893	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34713959	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56659354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59299321	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61559466	0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72729901	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72731804	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72731811	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8005725	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs913479	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832826	chr14:70559589-70723464	Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70579800-70599400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr14:70580800-70587000	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr14:70582200-70587200	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr14:70583400-70587200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr14:70583400-70587800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr14:70583400-70588600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr14:70583600-70599600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr14:70584000-70588000	Weak transcription	Fetal Brain Female	brain
9	chr14:70584000-70588200	Weak transcription	Fetal Brain Male	brain
10	chr14:70585600-70589200	Enhancers	Psoas Muscle	Psoas
11	chr14:70586600-70587200	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr14:70586600-70589400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr14:70586800-70587600	Enhancers	HSMMtube	muscle
14	chr14:70586800-70588000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr14:70586800-70588000	Weak transcription	Brain Angular Gyrus	brain
16	chr14:70586800-70589000	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr14:70586800-70589200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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