Variant report

Variant	rs12437377
Chromosome Location	chr14:70595703-70595704
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10782459	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11158836	1.00[CEU][hapmap];0.80[YRI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11158841	0.94[CEU][hapmap];0.87[YRI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1122706	0.86[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs12433044	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12434709	0.86[CEU][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12587012	0.82[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs1425614	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17107826	0.82[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs17107875	0.82[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs17107916	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs2031855	0.80[ASN][1000 genomes]
rs2840250	0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs2893	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34713959	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4902779	0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs4902780	0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs4902781	0.86[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs4902782	0.82[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs55695995	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56659354	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57605884	0.86[ASN][1000 genomes]
rs59299321	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61559466	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7157278	0.98[ASN][1000 genomes]
rs7158942	0.81[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs72729901	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72731804	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72731811	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8005725	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8006988	0.92[ASN][1000 genomes]
rs8007664	0.81[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs8019271	0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs8020693	0.81[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs8022074	0.81[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832826	chr14:70559589-70723464	Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70579800-70599400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr14:70583600-70599600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr14:70591400-70603200	Weak transcription	Psoas Muscle	Psoas

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