Variant report

Variant	rs17108089
Chromosome Location	chr14:79175238-79175239
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10483911	0.82[MEX][hapmap]
rs17108118	1.00[CEU][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17835635	0.82[MEX][hapmap]
rs6574464	0.83[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17108089	TGFB3	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79165000-79176800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr14:79165000-79181000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr14:79170800-79176600	Weak transcription	Brain Hippocampus Middle	brain
4	chr14:79171800-79175600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:79171800-79175600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr14:79174800-79176200	Weak transcription	Brain Substantia Nigra	brain
7	chr14:79175000-79177600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr14:79175200-79175800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links