Variant report

Variant	rs17108118
Chromosome Location	chr14:79184847-79184848
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10483911	0.82[MEX][hapmap]
rs17108089	1.00[CEU][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17108126	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs17835635	0.82[MEX][hapmap]
rs1863029	0.88[YRI][hapmap]
rs2113574	0.88[YRI][hapmap]
rs34466220	0.87[AFR][1000 genomes]
rs35695858	0.83[AFR][1000 genomes]
rs7149617	0.85[LWK][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17108118	TGFB3	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79176000-79189000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr14:79176600-79188600	Weak transcription	Brain Anterior Caudate	brain
3	chr14:79177000-79188400	Weak transcription	Brain Angular Gyrus	brain
4	chr14:79177200-79187400	Weak transcription	Brain Germinal Matrix	brain
5	chr14:79177200-79188000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr14:79181600-79188600	Weak transcription	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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