Variant report

Variant	rs17108386
Chromosome Location	chr14:79418280-79418281
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs17108263	1.00[AMR][1000 genomes]
rs17108499	1.00[AMR][1000 genomes]
rs17108613	1.00[AMR][1000 genomes]
rs17108638	1.00[AMR][1000 genomes]
rs17108649	1.00[AMR][1000 genomes]
rs1968436	1.00[AMR][1000 genomes]
rs56693583	1.00[AMR][1000 genomes]
rs57057681	1.00[AMR][1000 genomes]
rs57338265	1.00[AMR][1000 genomes]
rs59655196	1.00[AMR][1000 genomes]
rs60009119	1.00[AMR][1000 genomes]
rs61291300	1.00[AMR][1000 genomes]
rs61994014	1.00[AMR][1000 genomes]
rs61995262	1.00[AMR][1000 genomes]
rs61995263	1.00[AMR][1000 genomes]
rs7158612	1.00[AMR][1000 genomes]
rs73317254	1.00[AMR][1000 genomes]
rs73317257	1.00[AMR][1000 genomes]
rs73317263	1.00[AMR][1000 genomes]
rs73317277	1.00[AMR][1000 genomes]
rs73320804	1.00[AMR][1000 genomes]
rs73320805	1.00[AMR][1000 genomes]
rs73320808	1.00[AMR][1000 genomes]
rs73320821	1.00[AMR][1000 genomes]
rs73322875	1.00[AMR][1000 genomes]
rs73322878	1.00[AMR][1000 genomes]
rs73322879	1.00[AMR][1000 genomes]
rs73322888	1.00[AMR][1000 genomes]
rs73323317	1.00[AMR][1000 genomes]
rs73323375	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73324721	1.00[AMR][1000 genomes]
rs73324743	1.00[AMR][1000 genomes]
rs73324745	1.00[AMR][1000 genomes]
rs73324756	1.00[AMR][1000 genomes]
rs73324773	1.00[AMR][1000 genomes]
rs73325332	1.00[AMR][1000 genomes]
rs73325337	1.00[AMR][1000 genomes]
rs73325339	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73332953	1.00[AMR][1000 genomes]
rs73332961	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832838	chr14:79306627-79445382	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv917249	chr14:79388181-79574717	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1041991	chr14:79394408-79644886	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1037112	chr14:79412455-79527656	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79416600-79418400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr14:79416800-79418800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr14:79416800-79426200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr14:79416800-79436000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr14:79417800-79419000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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