Variant report

Variant	rs73317277
Chromosome Location	chr14:79464404-79464405
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs17108263	1.00[AMR][1000 genomes]
rs17108386	1.00[AMR][1000 genomes]
rs17108499	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17108613	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17108638	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17108649	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1968436	1.00[AMR][1000 genomes]
rs56693583	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57057681	1.00[AMR][1000 genomes]
rs57338265	1.00[AMR][1000 genomes]
rs59655196	1.00[AMR][1000 genomes]
rs60009119	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61291300	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61994014	1.00[AMR][1000 genomes]
rs61995262	1.00[AMR][1000 genomes]
rs61995263	1.00[AMR][1000 genomes]
rs7158612	1.00[AMR][1000 genomes]
rs73317254	1.00[AMR][1000 genomes]
rs73317257	1.00[AMR][1000 genomes]
rs73317263	1.00[AMR][1000 genomes]
rs73320804	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73320805	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73320808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73320821	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73322875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73322878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73322879	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73322888	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73323317	1.00[AMR][1000 genomes]
rs73323375	1.00[AMR][1000 genomes]
rs73324721	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73324743	1.00[AMR][1000 genomes]
rs73324745	1.00[AMR][1000 genomes]
rs73324756	1.00[AMR][1000 genomes]
rs73324773	1.00[AMR][1000 genomes]
rs73325332	1.00[AMR][1000 genomes]
rs73325337	1.00[AMR][1000 genomes]
rs73325339	1.00[AMR][1000 genomes]
rs73332953	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73332961	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917249	chr14:79388181-79574717	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1041991	chr14:79394408-79644886	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1037112	chr14:79412455-79527656	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1041198	chr14:79452019-79482977	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79454200-79471800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr14:79464000-79464800	Enhancers	Rectal Smooth Muscle	rectum
3	chr14:79464400-79464800	Enhancers	Colon Smooth Muscle	Colon
4	chr14:79464400-79464800	Enhancers	Fetal Lung	lung
5	chr14:79464400-79464800	Enhancers	Stomach Smooth Muscle	stomach
6	chr14:79464400-79465000	Enhancers	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links