Variant report

Variant	rs17108652
Chromosome Location	chr11:108723448-108723449
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:108722445..108725318-chr11:108725821..108728693,2	MCF-7	breast:
2	chr11:108722635..108725308-chr11:108736229..108737984,2	K562	blood:
3	chr11:108718162..108720092-chr11:108721364..108724119,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs2250385	1.00[AMR][1000 genomes]
rs2553759	1.00[AMR][1000 genomes]
rs60194914	0.85[AFR][1000 genomes]
rs60625914	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60861863	1.00[AMR][1000 genomes]
rs7110445	0.83[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7930190	1.00[AMR][1000 genomes]
rs7932521	1.00[AMR][1000 genomes]
rs7941789	1.00[AMR][1000 genomes]
rs7950532	1.00[AMR][1000 genomes]
rs898973	1.00[AMR][1000 genomes]
rs970163	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898388	chr11:108440814-108724639	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108680600-108724400	Weak transcription	Aorta	Aorta
2	chr11:108701000-108724400	Weak transcription	NHEK	skin
3	chr11:108706600-108724400	Weak transcription	Small Intestine	intestine
4	chr11:108706800-108724600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr11:108707200-108724400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr11:108707600-108740800	Weak transcription	HMEC	breast
7	chr11:108707800-108723800	Weak transcription	Fetal Muscle Leg	muscle
8	chr11:108708000-108724000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr11:108708000-108724400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr11:108708000-108724400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr11:108708000-108724600	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr11:108708200-108723600	Weak transcription	Rectal Smooth Muscle	rectum
13	chr11:108708200-108723600	Weak transcription	Stomach Smooth Muscle	stomach
14	chr11:108708200-108723800	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr11:108708200-108724400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr11:108708200-108724400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr11:108708200-108724600	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr11:108708200-108729200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr11:108708400-108724200	Weak transcription	NH-A	brain
20	chr11:108708400-108724400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr11:108708600-108724800	Weak transcription	Fetal Muscle Trunk	muscle
22	chr11:108709600-108723600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr11:108709600-108723800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr11:108709800-108724800	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr11:108709800-108724800	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr11:108710000-108724200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr11:108710000-108724400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr11:108710200-108723600	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr11:108710200-108723800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr11:108710200-108723800	Weak transcription	Adipose Nuclei	Adipose
31	chr11:108710200-108724400	Weak transcription	Duodenum Mucosa	Duodenum
32	chr11:108710200-108729200	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr11:108710200-108729400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr11:108710200-108735800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr11:108710200-108738200	Weak transcription	Gastric	stomach
36	chr11:108710400-108724400	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr11:108710600-108723800	Weak transcription	Left Ventricle	heart
38	chr11:108710600-108724600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr11:108710600-108729800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr11:108710800-108724600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr11:108711000-108724400	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr11:108711000-108724400	Weak transcription	GM12878-XiMat	blood
43	chr11:108712200-108724400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr11:108712400-108725000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr11:108714000-108724400	Weak transcription	Primary B cells from peripheral blood	blood
46	chr11:108714800-108724400	Weak transcription	NHLF	lung
47	chr11:108715400-108724600	Weak transcription	HSMM	muscle
48	chr11:108715400-108738200	Weak transcription	K562	blood
49	chr11:108715600-108724600	Weak transcription	Primary hematopoietic stem cells	blood
50	chr11:108715600-108725200	Weak transcription	Liver	Liver

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