Variant report

Variant	rs898973
Chromosome Location	chr11:108637623-108637624
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1466502	0.84[YRI][hapmap]
rs17108652	1.00[AMR][1000 genomes]
rs1947928	0.81[YRI][hapmap]
rs1947929	0.81[YRI][hapmap]
rs2061680	0.83[YRI][hapmap]
rs2250385	1.00[AMR][1000 genomes]
rs2553759	1.00[AMR][1000 genomes]
rs2726887	0.81[YRI][hapmap]
rs60625914	1.00[AMR][1000 genomes]
rs60861863	1.00[AMR][1000 genomes]
rs7110445	1.00[AMR][1000 genomes]
rs7930190	1.00[AMR][1000 genomes]
rs7932521	1.00[AMR][1000 genomes]
rs7941789	1.00[AMR][1000 genomes]
rs7950532	1.00[AMR][1000 genomes]
rs970163	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898388	chr11:108440814-108724639	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108605800-108663800	Weak transcription	K562	blood
2	chr11:108607600-108644600	Weak transcription	Aorta	Aorta
3	chr11:108614600-108638600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr11:108615600-108657000	Weak transcription	Primary B cells from cord blood	blood
5	chr11:108626200-108641600	Weak transcription	HSMM	muscle
6	chr11:108627800-108659400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr11:108629000-108661800	Weak transcription	Left Ventricle	heart
8	chr11:108629400-108644600	Weak transcription	Ovary	ovary
9	chr11:108629600-108638600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr11:108629600-108648600	Weak transcription	Fetal Lung	lung
11	chr11:108629800-108657200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr11:108635000-108640200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr11:108636000-108638800	Weak transcription	Brain Substantia Nigra	brain
14	chr11:108637600-108645000	Weak transcription	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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