Variant report

Variant	rs17108723
Chromosome Location	chr5:148154025-148154026
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17108717	1.00[AMR][1000 genomes]
rs17108720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17108739	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17108741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17108743	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17108745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59371726	1.00[AMR][1000 genomes]
rs73795130	1.00[AMR][1000 genomes]
rs73795132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73795134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73795135	1.00[AMR][1000 genomes]
rs73795136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73795138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883021	chr5:148060817-148182123	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv462481	chr5:148130138-148172689	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv599946	chr5:148130138-148172689	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:148146600-148155600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr5:148149000-148158000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr5:148149400-148155800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:148149800-148155600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:148149800-148155600	Weak transcription	HMEC	breast
6	chr5:148153200-148154400	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr5:148153400-148154200	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr5:148153400-148154200	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr5:148153400-148154200	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr5:148153400-148154200	Enhancers	Primary B cells from cord blood	blood
11	chr5:148153400-148154200	Enhancers	Primary B cells from peripheral blood	blood
12	chr5:148153400-148154200	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr5:148153600-148154200	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr5:148153800-148154200	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr5:148154000-148157800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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