Variant report

Variant	rs17108743
Chromosome Location	chr5:148171540-148171541
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17108717	1.00[AMR][1000 genomes]
rs17108720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17108723	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17108739	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17108741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17108745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59371726	1.00[AMR][1000 genomes]
rs73795130	1.00[AMR][1000 genomes]
rs73795132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73795134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73795135	1.00[AMR][1000 genomes]
rs73795136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73795138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883021	chr5:148060817-148182123	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv462481	chr5:148130138-148172689	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv599946	chr5:148130138-148172689	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:148168000-148171800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:148168800-148172400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr5:148169800-148171600	Enhancers	Hela-S3	cervix
4	chr5:148170000-148171600	Enhancers	Esophagus	oesophagus
5	chr5:148170000-148171800	Enhancers	Osteobl	bone
6	chr5:148170000-148175600	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr5:148170200-148171800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr5:148170200-148173400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr5:148170200-148174800	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr5:148170400-148171600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr5:148170400-148173400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr5:148170400-148175800	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr5:148170600-148171600	Enhancers	NHDF-Ad	bronchial
14	chr5:148170800-148171600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr5:148170800-148171600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr5:148170800-148173600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr5:148170800-148175200	Enhancers	Muscle Satellite Cultured Cells	--
18	chr5:148170800-148175400	Enhancers	GM12878-XiMat	blood
19	chr5:148171000-148172000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr5:148171000-148173400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr5:148171000-148173400	Enhancers	HMEC	breast
22	chr5:148171400-148171600	Enhancers	Lung	lung
23	chr5:148171400-148171600	Flanking Active TSS	NHEK	skin
24	chr5:148171400-148171800	Enhancers	Left Ventricle	heart
25	chr5:148171400-148172600	Weak transcription	NH-A	brain
26	chr5:148171400-148172800	Weak transcription	HSMM	muscle

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