Variant report

Variant	rs17108885
Chromosome Location	chr14:39634223-39634224
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:39614914..39616637-chr14:39633029..39635576,2	K562	blood:
2	chr14:39628408..39631487-chr14:39631812..39634593,3	K562	blood:
3	chr14:39632209..39634394-chr14:39648466..39651233,2	K562	blood:
4	chr14:39613201..39614805-chr14:39632982..39635752,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1474875	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1555260	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17092058	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17108840	1.00[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap]
rs17108852	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17108884	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs17108891	1.00[AMR][1000 genomes]
rs17108905	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17108939	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17108946	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17108962	1.00[MEX][hapmap]
rs17108984	1.00[MEX][hapmap]
rs17109037	1.00[MEX][hapmap]
rs17109079	1.00[MEX][hapmap]
rs17109123	1.00[MEX][hapmap]
rs2415530	1.00[MEX][hapmap]
rs41407745	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58634862	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59099504	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59245613	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59671146	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59884790	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60224924	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60746390	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61170483	1.00[AMR][1000 genomes]
rs6571899	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6571903	1.00[MEX][hapmap]
rs7144933	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7145653	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7145677	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7145969	1.00[ASW][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7150364	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8007188	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8009864	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8010386	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8014741	1.00[MEX][hapmap]
rs8014887	1.00[MEX][hapmap]
rs8016435	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3429206	chr14:39160730-39648836	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv1051247	chr14:39604035-39652789	Genic enhancers Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	esv1813567	chr14:39632114-39642840	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39584200-39636000	Weak transcription	Small Intestine	intestine
2	chr14:39584200-39638600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr14:39588600-39635400	Weak transcription	Fetal Brain Male	brain
4	chr14:39598800-39636200	Weak transcription	Stomach Mucosa	stomach
5	chr14:39604400-39635400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr14:39611000-39637600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr14:39611200-39638800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr14:39611400-39638000	Weak transcription	A549	lung
9	chr14:39612800-39637800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr14:39614400-39636800	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr14:39614800-39636800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr14:39616200-39637000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr14:39616800-39636400	Strong transcription	Fetal Muscle Trunk	muscle
14	chr14:39617000-39634800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr14:39617000-39636200	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr14:39617200-39635800	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr14:39617600-39637800	Weak transcription	Psoas Muscle	Psoas
18	chr14:39617800-39637400	Weak transcription	K562	blood
19	chr14:39619600-39636200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr14:39619600-39637400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr14:39619800-39636200	Strong transcription	Fetal Stomach	stomach
22	chr14:39621000-39638400	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr14:39624400-39638000	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr14:39625000-39636000	Strong transcription	Placenta	Placenta
25	chr14:39626800-39637600	Weak transcription	Fetal Heart	heart
26	chr14:39626800-39637800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr14:39627000-39635400	Weak transcription	Colon Smooth Muscle	Colon
28	chr14:39627000-39637200	Weak transcription	Brain Angular Gyrus	brain
29	chr14:39627000-39637400	Weak transcription	Brain Cingulate Gyrus	brain
30	chr14:39627000-39637600	Weak transcription	HSMMtube	muscle
31	chr14:39627000-39637800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr14:39627000-39637800	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr14:39627000-39638800	Weak transcription	Gastric	stomach
34	chr14:39627200-39634600	Weak transcription	Fetal Kidney	kidney
35	chr14:39627200-39638600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr14:39628200-39637600	Weak transcription	NHDF-Ad	bronchial
37	chr14:39628400-39635600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr14:39628800-39635000	Strong transcription	Fetal Intestine Small	intestine
39	chr14:39629000-39636400	Strong transcription	Fetal Intestine Large	intestine
40	chr14:39629400-39634400	Strong transcription	Primary T cells from cord blood	blood
41	chr14:39629400-39634800	Strong transcription	Fetal Brain Female	brain
42	chr14:39630000-39635000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr14:39630000-39635000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr14:39630200-39634600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr14:39630400-39635000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr14:39630400-39635000	Strong transcription	Primary neutrophils fromperipheralblood	blood
47	chr14:39630400-39636200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr14:39630400-39636200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr14:39630400-39636400	Strong transcription	Fetal Muscle Leg	muscle
50	chr14:39630800-39635000	Strong transcription	Cortex derived primary cultured neurospheres	brain

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