Variant report

Variant	rs17108984
Chromosome Location	chr14:39671835-39671836
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000092208	Chromatin interaction
ENSG00000150527	Chromatin interaction
ENSG00000258940	Chromatin interaction
ENSG00000258941	Chromatin interaction
ENSG00000100941	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs17108840	1.00[MEX][hapmap]
rs17108884	1.00[MEX][hapmap]
rs17108885	1.00[MEX][hapmap]
rs17108962	1.00[MEX][hapmap]
rs17109037	1.00[MEX][hapmap]
rs17109079	1.00[MEX][hapmap]
rs17109123	1.00[MEX][hapmap]
rs2415530	1.00[MEX][hapmap]
rs58306156	1.00[AMR][1000 genomes]
rs58506434	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59045671	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59143464	1.00[AMR][1000 genomes]
rs6571902	1.00[AMR][1000 genomes]
rs6571903	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs7144933	1.00[MEX][hapmap]
rs7146968	1.00[AMR][1000 genomes]
rs7150364	1.00[MEX][hapmap]
rs7150534	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7154840	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73291602	1.00[AMR][1000 genomes]
rs73293324	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8006043	1.00[AMR][1000 genomes]
rs8010195	1.00[AMR][1000 genomes]
rs8010944	1.00[AMR][1000 genomes]
rs8011297	1.00[AMR][1000 genomes]
rs8013863	1.00[AMR][1000 genomes]
rs8014741	1.00[MEX][hapmap]
rs8014887	1.00[MEX][hapmap]
rs8015801	1.00[AMR][1000 genomes]
rs8018947	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1246	chr14:39656597-39701520	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1053133	chr14:39657535-39770729	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv974270	chr14:39664152-39680061	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39654400-39672000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:39658000-39672400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr14:39668200-39673000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr14:39671000-39672400	Enhancers	HepG2	liver
5	chr14:39671200-39672800	Enhancers	Hela-S3	cervix
6	chr14:39671400-39672000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr14:39671400-39672000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr14:39671400-39672600	Enhancers	A549	lung
9	chr14:39671600-39672600	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr14:39671600-39672800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr14:39671800-39672800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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