Variant report

Variant	rs6571902
Chromosome Location	chr14:39654905-39654906
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:39654749..39656779-chr14:39701075..39703630,2	K562	blood:
2	chr14:39651767..39657982-chr14:39696424..39701629,5	MCF-7	breast:
3	chr14:39653322..39655691-chr14:39686877..39688589,2	MCF-7	breast:
4	chr14:39653320..39655243-chr14:39697631..39700198,2	MCF-7	breast:
5	chr14:39652103..39654981-chr14:39673043..39674708,2	K562	blood:
6	chr14:39650808..39656380-chr14:39733766..39738257,10	MCF-7	breast:
7	chr14:39571020..39573430-chr14:39654386..39657374,3	K562	blood:
8	chr14:39652603..39655105-chr14:39837196..39838918,2	K562	blood:
9	chr14:39571888..39573621-chr14:39654592..39656288,2	K562	blood:
10	chr14:39653217..39654997-chr14:39768154..39769847,2	K562	blood:
11	chr14:39654703..39656362-chr8:144814498..144816191,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000150526	Chromatin interaction
ENSG00000258651	Chromatin interaction
ENSG00000258940	Chromatin interaction
ENSG00000265660	Chromatin interaction
ENSG00000100934	Chromatin interaction
ENSG00000258941	Chromatin interaction
ENSG00000180921	Chromatin interaction
ENSG00000150527	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs17108984	1.00[AMR][1000 genomes]
rs58306156	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58506434	1.00[AMR][1000 genomes]
rs59045671	1.00[AMR][1000 genomes]
rs59143464	1.00[AMR][1000 genomes]
rs6571903	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7146968	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7150534	1.00[AMR][1000 genomes]
rs7154840	1.00[AMR][1000 genomes]
rs7158581	1.00[AFR][1000 genomes]
rs7158832	1.00[AFR][1000 genomes]
rs73291602	1.00[AMR][1000 genomes]
rs73293324	1.00[AMR][1000 genomes]
rs8006043	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8010195	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8010944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8011297	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8013863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8014741	1.00[AFR][1000 genomes]
rs8015801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8018947	1.00[AMR][1000 genomes]

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39645600-39655400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr14:39645800-39655200	Strong transcription	Placenta	Placenta
3	chr14:39645800-39657200	Strong transcription	HSMM	muscle
4	chr14:39646000-39655200	Strong transcription	HSMMtube	muscle
5	chr14:39646200-39655000	Strong transcription	Stomach Smooth Muscle	stomach
6	chr14:39646400-39655000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr14:39646400-39655000	Strong transcription	HMEC	breast
8	chr14:39646400-39655200	Strong transcription	HUES48 Cell Line	embryonic stem cell
9	chr14:39646400-39655200	Strong transcription	Primary B cells from peripheral blood	blood
10	chr14:39646400-39655200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr14:39646400-39655400	Strong transcription	HUES6 Cell Line	embryonic stem cell
12	chr14:39646400-39655400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr14:39646400-39655800	Strong transcription	Fetal Thymus	thymus
14	chr14:39646600-39655000	Strong transcription	Rectal Mucosa Donor 29	rectum
15	chr14:39646600-39655000	Strong transcription	Skeletal Muscle Female	skeletal muscle
16	chr14:39646600-39655400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr14:39646800-39655000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr14:39646800-39655000	Strong transcription	NH-A	brain
19	chr14:39647000-39655000	Strong transcription	HUES64 Cell Line	embryonic stem cell
20	chr14:39647000-39655400	Strong transcription	Brain Germinal Matrix	brain
21	chr14:39647800-39655000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr14:39647800-39658800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr14:39650400-39655000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr14:39650800-39655800	Weak transcription	Fetal Heart	heart
25	chr14:39650800-39656200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr14:39651000-39655800	Weak transcription	Esophagus	oesophagus
27	chr14:39651000-39655800	Weak transcription	Ovary	ovary
28	chr14:39651000-39656000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr14:39651000-39656400	Strong transcription	GM12878-XiMat	blood
30	chr14:39651000-39656600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr14:39651000-39657000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr14:39651000-39661600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr14:39651000-39662000	Weak transcription	Pancreas	Pancrea
34	chr14:39651200-39656200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr14:39651200-39656200	Weak transcription	Brain Angular Gyrus	brain
36	chr14:39651200-39657000	Weak transcription	Small Intestine	intestine
37	chr14:39651600-39655000	Strong transcription	HUVEC	blood vessel
38	chr14:39651800-39655200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr14:39652000-39656000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr14:39652200-39655800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr14:39652200-39656200	Weak transcription	Fetal Brain Male	brain
42	chr14:39652400-39655200	Strong transcription	Fetal Muscle Leg	muscle
43	chr14:39652400-39657200	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr14:39652600-39655800	Weak transcription	Brain Anterior Caudate	brain
45	chr14:39652600-39655800	Strong transcription	Fetal Muscle Trunk	muscle
46	chr14:39652800-39655200	Strong transcription	Fetal Stomach	stomach
47	chr14:39653000-39655600	Weak transcription	Colon Smooth Muscle	Colon
48	chr14:39653000-39656200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr14:39653000-39658000	Weak transcription	Fetal Lung	lung
50	chr14:39653000-39662000	Weak transcription	Primary hematopoietic stem cells	blood

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