Variant report

Variant	rs17109070
Chromosome Location	chr14:79791667-79791668
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17108966	1.00[MEX][hapmap]
rs17109025	1.00[MEX][hapmap]
rs17109075	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2887896	1.00[MEX][hapmap]
rs6574504	1.00[MEX][hapmap]
rs7144015	1.00[MEX][hapmap]
rs7151352	1.00[MEX][hapmap]
rs715697	0.85[AMR][1000 genomes]
rs7159606	1.00[MEX][hapmap]
rs7159960	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv902110	chr14:79624492-79998294	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv530072	chr14:79769657-79928269	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79782800-79798400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr14:79784800-79798800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr14:79790600-79795000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr14:79790800-79791800	Enhancers	Fetal Brain Male	brain
5	chr14:79791000-79792400	Enhancers	Brain Germinal Matrix	brain
6	chr14:79791000-79797200	Weak transcription	Colon Smooth Muscle	Colon
7	chr14:79791200-79791800	Enhancers	Fetal Lung	lung
8	chr14:79791200-79791800	Enhancers	Rectal Smooth Muscle	rectum
9	chr14:79791200-79792000	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr14:79791200-79792200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr14:79791400-79791800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr14:79791400-79792800	Enhancers	Fetal Brain Female	brain
13	chr14:79791600-79792200	Enhancers	Pancreas	Pancrea
14	chr14:79791600-79792200	Enhancers	Stomach Smooth Muscle	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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