Variant report

Variant	rs17109197
Chromosome Location	chr14:71715028-71715029
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12435675	1.00[CHB][hapmap]
rs976044	0.82[AMR][1000 genomes]
rs976147	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041980	chr14:71196358-71767339	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv542125	chr14:71196358-71767339	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv1044090	chr14:71496198-71780026	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv832827	chr14:71676178-71833519	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71709000-71715200	Weak transcription	Fetal Brain Male	brain
2	chr14:71709600-71717800	Weak transcription	Fetal Lung	lung
3	chr14:71713000-71715400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr14:71713200-71715600	Enhancers	Osteobl	bone
5	chr14:71713400-71715800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr14:71714000-71717200	Weak transcription	Primary T cells from cord blood	blood
7	chr14:71714200-71715200	Weak transcription	HMEC	breast
8	chr14:71714200-71716600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr14:71714200-71716800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr14:71714800-71715600	Enhancers	Fetal Heart	heart
11	chr14:71714800-71715800	Enhancers	Muscle Satellite Cultured Cells	--
12	chr14:71715000-71715200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr14:71715000-71715800	Enhancers	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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