Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:72686361..72688568-chr14:72692682..72695417,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11622985	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11623045	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11847170	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11847225	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs11847262	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11851422	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs12894979	0.83[YRI][hapmap]
rs17109477	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2238222	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs2238225	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs2238226	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs2238229	0.84[YRI][hapmap]
rs2238230	0.84[YRI][hapmap]
rs2238232	0.83[YRI][hapmap]
rs2238233	0.83[YRI][hapmap]
rs35077108	0.81[AFR][1000 genomes]
rs4903001	0.82[AFR][1000 genomes]
rs4903002	0.80[AFR][1000 genomes]
rs58722304	0.84[AFR][1000 genomes]
rs67327215	0.81[AFR][1000 genomes]
rs8006974	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs8007128	0.82[AFR][1000 genomes]
rs8016936	0.86[YRI][hapmap];0.81[AFR][1000 genomes]
rs847301	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs847303	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs847315	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1041492	chr14:72634606-72768970	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72687800-72700200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr14:72687800-72705800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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