Variant report

Variant	rs2238226
Chromosome Location	chr14:72697049-72697050
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:72694736..72697580-chr14:72698002..72700652,3	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11847225	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11851422	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12147219	0.81[CEU][hapmap]
rs12147220	0.82[CEU][hapmap]
rs12147803	0.82[CEU][hapmap]
rs12878303	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12891167	0.81[CEU][hapmap];0.80[JPT][hapmap]
rs12894979	0.83[YRI][hapmap]
rs12897241	0.82[CEU][hapmap]
rs1520329	0.81[CEU][hapmap]
rs17109194	0.82[CEU][hapmap]
rs17109324	0.93[AFR][1000 genomes]
rs17109404	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs17109477	0.91[YRI][hapmap]
rs17109573	0.82[CEU][hapmap]
rs1879288	0.82[CEU][hapmap]
rs2238203	0.82[CEU][hapmap]
rs2238208	0.82[CEU][hapmap]
rs2238210	0.81[CEU][hapmap]
rs2238220	0.82[CEU][hapmap]
rs2238221	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2238222	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2238225	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2238228	0.93[AFR][1000 genomes]
rs2238229	0.82[CEU][hapmap];0.84[YRI][hapmap];0.93[AFR][1000 genomes]
rs2238230	0.82[CEU][hapmap];0.84[YRI][hapmap];0.93[AFR][1000 genomes]
rs2238231	0.93[AFR][1000 genomes]
rs2238232	0.81[CEU][hapmap];0.83[YRI][hapmap];0.93[AFR][1000 genomes]
rs2238233	0.81[CEU][hapmap];0.83[YRI][hapmap];0.93[AFR][1000 genomes]
rs2238234	0.82[CEU][hapmap]
rs2238236	0.80[CEU][hapmap]
rs2238237	0.81[CEU][hapmap]
rs2238238	0.83[CHB][hapmap]
rs2239253	0.81[CEU][hapmap]
rs2239254	0.81[CEU][hapmap]
rs2239256	0.82[CEU][hapmap]
rs2239262	0.81[CEU][hapmap]
rs2283394	0.81[CEU][hapmap]
rs2283395	0.81[CEU][hapmap]
rs2283399	0.82[CEU][hapmap]
rs35077108	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35529091	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4899429	0.81[CEU][hapmap]
rs4903001	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4903002	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4903005	0.81[CEU][hapmap]
rs67327215	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7156265	0.81[CEU][hapmap]
rs8006974	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8007128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8016936	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1041492	chr14:72634606-72768970	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv977614	chr14:72696106-72702781	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72687800-72700200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr14:72687800-72705800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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