Variant report

Variant	rs12878303
Chromosome Location	chr14:72698976-72698977
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11847225	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11851422	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12891167	0.80[JPT][hapmap]
rs2238221	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2238222	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2238225	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2238226	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2238238	0.83[CHB][hapmap]
rs35077108	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35529091	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4903001	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4903002	1.00[ASN][1000 genomes]
rs67327215	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8006974	1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8007128	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8016936	1.00[CHB][hapmap];0.86[JPT][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs847301	0.96[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1041492	chr14:72634606-72768970	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv977614	chr14:72696106-72702781	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72687800-72700200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr14:72687800-72705800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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