Variant report

Variant	rs17109521
Chromosome Location	chr14:25509875-25509876
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10150874	0.88[ASN][1000 genomes]
rs10483292	0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1062229	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs11626436	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs11627467	0.95[EUR][1000 genomes]
rs11628114	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs11844636	1.00[CHB][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs17109491	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17109498	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17109509	0.85[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17109518	0.83[YRI][hapmap];0.89[AFR][1000 genomes]
rs17109529	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17109537	0.85[JPT][hapmap]
rs17109538	0.92[CEU][hapmap]
rs1952501	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2225270	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7149439	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs7153942	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs8004569	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8004614	0.92[CEU][hapmap]
rs8017234	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs8018041	0.85[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv901509	chr14:25398571-25743484	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv901510	chr14:25476170-25526309	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
6	nsv901511	chr14:25505085-25588029	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25492400-25517600	Weak transcription	Psoas Muscle	Psoas
2	chr14:25497200-25515200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr14:25503800-25515800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr14:25504000-25511000	Weak transcription	Small Intestine	intestine
5	chr14:25505200-25510400	Weak transcription	Fetal Intestine Large	intestine
6	chr14:25506600-25511400	Weak transcription	Right Atrium	heart
7	chr14:25506800-25510800	Weak transcription	Brain Hippocampus Middle	brain
8	chr14:25506800-25511200	Weak transcription	Brain Angular Gyrus	brain
9	chr14:25507000-25510800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr14:25507000-25510800	Weak transcription	HSMMtube	muscle
11	chr14:25507000-25511000	Weak transcription	Stomach Smooth Muscle	stomach
12	chr14:25507000-25511200	Weak transcription	Colon Smooth Muscle	Colon
13	chr14:25507000-25511400	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr14:25507000-25512000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr14:25507200-25511000	Weak transcription	Fetal Heart	heart
16	chr14:25507200-25511400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr14:25507600-25511600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr14:25508200-25510800	Weak transcription	Brain Substantia Nigra	brain
19	chr14:25508600-25512200	Enhancers	Stomach Mucosa	stomach
20	chr14:25508800-25510600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr14:25508800-25510800	Weak transcription	Duodenum Mucosa	Duodenum
22	chr14:25508800-25510800	Weak transcription	Fetal Lung	lung
23	chr14:25508800-25511200	Weak transcription	Brain Cingulate Gyrus	brain
24	chr14:25508800-25511600	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr14:25509000-25511400	Weak transcription	Brain Anterior Caudate	brain
26	chr14:25509000-25513600	Weak transcription	Lung	lung
27	chr14:25509200-25510800	Weak transcription	HSMM	muscle
28	chr14:25509400-25510800	Enhancers	Rectal Mucosa Donor 31	rectum
29	chr14:25509400-25511800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr14:25509400-25513000	Weak transcription	Fetal Muscle Trunk	muscle
31	chr14:25509600-25510400	Weak transcription	Fetal Intestine Small	intestine
32	chr14:25509600-25510600	Weak transcription	HepG2	liver
33	chr14:25509600-25510800	Weak transcription	Left Ventricle	heart
34	chr14:25509600-25510800	Weak transcription	Pancreas	Pancrea
35	chr14:25509600-25510800	Weak transcription	Right Ventricle	heart
36	chr14:25509600-25510800	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr14:25509600-25511000	Weak transcription	H9 Cell Line	embryonic stem cell

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