Variant report

Variant rs17109529
Chromosome Location chr14:25511727-25511728
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:52 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr14:25492400-25517600 Weak transcription Psoas Muscle Psoas
2 chr14:25497200-25515200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
3 chr14:25503800-25515800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
4 chr14:25507000-25512000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
5 chr14:25508600-25512200 Enhancers Stomach Mucosa stomach
6 chr14:25509000-25513600 Weak transcription Lung lung
7 chr14:25509400-25511800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
8 chr14:25509400-25513000 Weak transcription Fetal Muscle Trunk muscle
9 chr14:25510000-25515800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
10 chr14:25510400-25512000 Enhancers Fetal Intestine Large intestine
11 chr14:25510600-25512600 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
12 chr14:25510600-25512600 Enhancers HepG2 liver
13 chr14:25510800-25511800 Enhancers Sigmoid Colon Sigmoid Colon
14 chr14:25510800-25511800 Strong transcription HSMM muscle
15 chr14:25510800-25512000 Enhancers Pancreas Pancrea
16 chr14:25510800-25512000 Enhancers Placenta Amnion Placenta Amnion
17 chr14:25510800-25512000 Enhancers Right Ventricle heart
18 chr14:25510800-25512200 Enhancers Liver Liver
19 chr14:25510800-25512200 Enhancers Left Ventricle heart
20 chr14:25510800-25514200 Enhancers Brain Hippocampus Middle brain
21 chr14:25510800-25514400 Enhancers Brain Substantia Nigra brain
22 chr14:25511000-25511800 Enhancers Gastric stomach
23 chr14:25511000-25512400 Enhancers Pancreatic Islets Pancreatic Islet
24 chr14:25511000-25512600 Enhancers HUES48 Cell Line embryonic stem cell
25 chr14:25511000-25513800 Enhancers Small Intestine intestine
26 chr14:25511000-25514200 Genic enhancers Fetal Lung lung
27 chr14:25511000-25517400 Weak transcription HSMMtube muscle
28 chr14:25511200-25511800 Weak transcription Fetal Heart heart
29 chr14:25511200-25512000 Weak transcription H9 Cell Line embryonic stem cell
30 chr14:25511200-25512000 Enhancers Colon Smooth Muscle Colon
31 chr14:25511200-25512000 Genic enhancers Stomach Smooth Muscle stomach
32 chr14:25511200-25512200 Enhancers iPS-18 Cell Line embryonic stem cell
33 chr14:25511200-25512200 Enhancers Colonic Mucosa Colon
34 chr14:25511200-25512200 Enhancers Duodenum Mucosa Duodenum
35 chr14:25511200-25514000 Enhancers Brain Cingulate Gyrus brain
36 chr14:25511400-25511800 Flanking Active TSS Rectal Mucosa Donor 29 rectum
37 chr14:25511400-25511800 Enhancers GM12878-XiMat blood
38 chr14:25511400-25512000 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
39 chr14:25511400-25512000 Enhancers Fetal Thymus thymus
40 chr14:25511400-25512000 Enhancers Right Atrium heart
41 chr14:25511400-25512200 Enhancers iPS-20b Cell Line embryonic stem cell
42 chr14:25511400-25512200 Flanking Active TSS Brain Dorsolateral Prefrontal Cortex brain
43 chr14:25511400-25512200 Enhancers Duodenum Smooth Muscle Duodenum
44 chr14:25511400-25512600 Genic enhancers Fetal Intestine Small intestine
45 chr14:25511400-25513000 Enhancers Rectal Smooth Muscle rectum
46 chr14:25511400-25513600 Enhancers Brain Anterior Caudate brain
47 chr14:25511600-25511800 Flanking Active TSS Brain Angular Gyrus brain
48 chr14:25511600-25511800 Enhancers Fetal Brain Male brain
49 chr14:25511600-25512000 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
50 chr14:25511600-25512000 Enhancers Rectal Mucosa Donor 31 rectum

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