Variant report

Variant	rs17109577
Chromosome Location	chr14:80069928-80069929
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10483927	1.00[AMR][1000 genomes]
rs12587614	0.90[ASN][1000 genomes]
rs12587752	1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs17109418	0.86[ASN][1000 genomes]
rs17109448	0.85[ASN][1000 genomes]
rs17109473	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17109557	0.98[ASN][1000 genomes]
rs17109754	1.00[AMR][1000 genomes]
rs59693725	0.87[ASN][1000 genomes]
rs8008318	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1039622	chr14:79908702-80266601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv869542	chr14:80009619-80118315	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80064800-80074600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr14:80065600-80072200	Weak transcription	NH-A	brain
3	chr14:80068600-80070400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr14:80069000-80070200	Enhancers	Fetal Lung	lung
5	chr14:80069000-80072200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr14:80069200-80070000	Enhancers	Stomach Smooth Muscle	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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