Variant report

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10483924	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs1080130	1.00[CEU][hapmap]
rs12587614	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12587752	1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs17109288	1.00[CEU][hapmap]
rs17109299	1.00[CEU][hapmap]
rs17109308	1.00[CEU][hapmap]
rs17109317	1.00[CEU][hapmap]
rs17109338	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17109362	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs17109409	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17109448	1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs17109473	1.00[CHB][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs17109557	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17109577	0.86[ASN][1000 genomes]
rs2371057	0.87[EUR][1000 genomes]
rs4448862	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs59471787	0.87[EUR][1000 genomes]
rs59693725	0.99[ASN][1000 genomes]
rs60586352	0.87[EUR][1000 genomes]
rs60604346	0.87[EUR][1000 genomes]
rs61274136	0.87[EUR][1000 genomes]
rs6574509	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs7145991	1.00[CEU][hapmap]
rs7153889	1.00[CEU][hapmap]
rs7158082	0.87[EUR][1000 genomes]
rs7158779	0.87[EUR][1000 genomes]
rs7158959	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs73324258	0.87[EUR][1000 genomes]
rs8015537	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs920122	0.87[EUR][1000 genomes]
rs920123	1.00[CEU][hapmap];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1039622	chr14:79908702-80266601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv902112	chr14:79939393-80050771	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv869542	chr14:80009619-80118315	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80008400-80013000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr14:80009600-80018000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr14:80010200-80012800	Weak transcription	Pancreas	Pancrea
4	chr14:80010400-80015800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr14:80010400-80018000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:80010800-80014000	Weak transcription	Aorta	Aorta
7	chr14:80010800-80019000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr14:80011000-80018800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr14:80011200-80013400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr14:80011400-80013400	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr14:80011600-80015800	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr14:80011800-80015200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr14:80011800-80015600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr14:80011800-80069200	Weak transcription	Stomach Smooth Muscle	stomach
15	chr14:80012000-80015200	Weak transcription	Osteobl	bone
16	chr14:80012000-80015600	Weak transcription	NH-A	brain

Quick Search: