Variant report
| Variant | rs17109288 |
|---|---|
| Chromosome Location | chr14:79954413-79954414 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs10483924 | 1.00[CEU][hapmap] |
| rs1080130 | 1.00[CEU][hapmap] |
| rs12587614 | 1.00[CEU][hapmap] |
| rs17109299 | 1.00[CEU][hapmap] |
| rs17109308 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs17109317 | 1.00[CEU][hapmap];1.00[AMR][1000 genomes] |
| rs17109321 | 1.00[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs17109338 | 1.00[CEU][hapmap];1.00[AMR][1000 genomes] |
| rs17109351 | 0.82[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs17109362 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs17109365 | 1.00[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs17109374 | 1.00[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs17109409 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs17109418 | 1.00[CEU][hapmap] |
| rs17109557 | 1.00[CEU][hapmap] |
| rs4448862 | 1.00[CEU][hapmap] |
| rs59471787 | 0.92[ASN][1000 genomes] |
| rs60586352 | 0.85[ASN][1000 genomes] |
| rs60604346 | 0.85[ASN][1000 genomes] |
| rs60701970 | 0.97[ASN][1000 genomes] |
| rs6574509 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs7145991 | 1.00[CEU][hapmap] |
| rs7153889 | 1.00[CEU][hapmap];0.85[JPT][hapmap] |
| rs7158082 | 0.85[ASN][1000 genomes] |
| rs7158779 | 0.85[ASN][1000 genomes] |
| rs7158959 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs73324258 | 0.85[ASN][1000 genomes] |
| rs8015537 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs920122 | 1.00[AMR][1000 genomes] |
| rs920123 | 1.00[CEU][hapmap];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv902110 | chr14:79624492-79998294 | Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv1045241 | chr14:79885361-80734201 | Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
| 3 | nsv1039622 | chr14:79908702-80266601 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv902112 | chr14:79939393-80050771 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:79953600-79954600 | Enhancers | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
| 2 | chr14:79953600-79954800 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
| 3 | chr14:79954000-79954600 | Enhancers | Stomach Smooth Muscle | stomach |
